bigraph-viz notebooks
- Basics — Tutorial covering stores, processes, wires, and composites
- Basics2 — Extended basics with cell structure example
- Basics Pres — Presentation-style examples
- Bigraph Example — Transcription/translation and multicellular models
- Cell Atlas — Kidney glomerulus model
- Ecoli — Whole-cell E. coli wiring diagram
- Ecoli2 — E. coli with plasmid replication
- Format — Styling options for bigraph figures
- Gut Microbiome — Multi-region gut model with cdFBA-CRM