bigraph-viz notebooks

• Basics — Tutorial covering stores, processes, wires, and composites
• Basics2 — Extended basics with cell structure example
• Basics Pres — Presentation-style examples
• Bigraph Example — Transcription/translation and multicellular models
• Cell Atlas — Kidney glomerulus model
• Ecoli — Whole-cell E. coli wiring diagram
• Ecoli2 — E. coli with plasmid replication
• Format — Styling options for bigraph figures
• Gut Microbiome — Multi-region gut model with cdFBA-CRM