Simulation Results

ecoli_core_dfba

This simulation runs a dFBA (dynamic Flux Balance Analysis) model of E. coli core metabolism, tracking external concentrations and biomass.

Runtime: 0.50 seconds

ecoli_core_dfba.json

ecoli_core_dfba_viz.png

ecoli_core_dfba.png

ecoli_dfba

This simulation runs a dFBA of the large E. coli metabolic model, iAF1260

Runtime: 5.04 seconds

ecoli_dfba.json

ecoli_dfba_viz.png

ecoli_dfba.png

cdiff_dfba

This simulation runs a dFBA model of Clostridioides difficile. iCN900

Runtime: 1.91 seconds

cdiff_dfba.json

cdiff_dfba_viz.png

cdiff_dfba.png

pputida_dfba

This simulation runs a dFBA model of Pseudomonas putida, iJN746

Runtime: 3.00 seconds

pputida_dfba.json

pputida_dfba_viz.png

pputida_dfba.png

yeast_dfba

This simulation runs a dFBA model of Saccharomyces cerevisiae (yeast), iMM904

Runtime: 3.70 seconds

yeast_dfba.json

yeast_dfba_viz.png

yeast_dfba.png

llactis_dfba

This simulation runs a dFBA model of Lactococcus lactis, iNF517

Runtime: 1.59 seconds

llactis_dfba.json

llactis_dfba_viz.png

llactis_dfba.png

multi_dfba

This simulation runs multiple dFBA processes in the same environment, each with its own model and parameters.

Runtime: 16.24 seconds

multi_dfba.json

multi_dfba_viz.png

multi_dfba.png

spatial_many_dfba

This simulation introduces a spatial lattice, with a single dFBA process in each lattice site.

Runtime: 8.90 seconds

spatial_many_dfba.json