Baseline whole-cell

The full v2ecoli single-cell whole-cell model.

v2ecoli.composites.baseline.baseline

LoomViz2

Biologically-organized

Baseline re-organized into biological subsystems.

v2ecoli.composites.biological.biological

LoomViz2

Millard FBA bridge

Millard kinetic metabolism bridged to the WCM via FBA.

v2ecoli.composites.millard_fba_bridge_harness.millard_fba_bridge_harness

LoomViz2

Colony

A multi-cell colony of baseline cells.

v2ecoli.composites.colony.colony

LoomViz2Viz

Reactor–bird coupling

The WCM coupled to a bioreactor environment.

v2ecoli.composites.reactor_bird_coupled.reactor_bird_coupled

LoomViz2